STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UV8b_3910Pre-mRNA polyadenylation factor FIP1. (331 aa)    
Predicted Functional Partners:
UV8b_6816
mRNA cleavage and polyadenylation specificity factor complex subunit.
    
 0.999
UV8b_994
Putative methyltransferase LaeA-like.
    
 0.999
UV8b_6378
Cleavage and polyadenylation specificity factor subunit 2.
    
 0.998
UV8b_782
Cleavage and polyadenylation specifity factor.
    
 0.998
UV8b_1388
CFIA complex component Rna14.
   
 0.995
UV8b_4581
Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.
   
 0.994
UV8b_2941
Retinoblastoma-binding protein.
    
 0.990
UV8b_930
Protein SSU72.
    
 0.990
UV8b_6848
RNA recognition motif containing protein.
    
 0.982
UV8b_5011
Heat shock protein 30; Belongs to the small heat shock protein (HSP20) family.
    
 0.981
Your Current Organism:
Ustilaginoidea virens
NCBI taxonomy Id: 1159556
Other names: Claviceps virens, MAFF 240994, MAFF 240995, TNS:F-18423, U. virens, Villosiclava virens, Villosiclava virens (Y. Sakurai ex Nakata) E. Tanaka & C. Tanaka 2009
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.