STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UV8b_3774Pre-mRNA splicing factor. (322 aa)    
Predicted Functional Partners:
UV8b_4424
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 0.988
UV8b_1311
Nuclear cap-binding protein subunit 2.
    
 0.973
UV8b_3406
Serine/threonine-protein kinase SRPK2.
    
 0.971
UV8b_8100
mRNA export factor mex67.
   
 0.951
UV8b_332
Pre-mRNA splicing factor CEF1.
    
 
 0.951
UV8b_7294
PWI domain-containing protein.
   
 
 0.948
UV8b_2033
Importin-beta domain containing protein.
    
 
 0.947
UV8b_2483
RNP domain protein.
    
 0.941
UV8b_4580
Transformer-SR ribonucleoprotein.
   
 0.937
UV8b_8028
Cap binding protein.
    
 0.924
Your Current Organism:
Ustilaginoidea virens
NCBI taxonomy Id: 1159556
Other names: Claviceps virens, MAFF 240994, MAFF 240995, TNS:F-18423, U. virens, Villosiclava virens, Villosiclava virens (Y. Sakurai ex Nakata) E. Tanaka & C. Tanaka 2009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.