STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UV8b_3312RNA polymerase subunit. (724 aa)    
Predicted Functional Partners:
UV8b_2472
Putative DNA polymerase delta subunit 2.
    
 0.727
UV8b_6180
SMN family protein Smn1.
    
 0.717
UV8b_2653
DNA polymerase.
   
 0.709
UV8b_5035
Putative DNA repair protein Mus81.
    
 0.705
UV8b_966
Amidohydrolase family protein.
   
  0.704
UV8b_4414
Small nuclear ribonucleoprotein Sm D1.
    
 0.693
UV8b_1748
MUS38-like protein.
    
 0.676
UV8b_7551
Chromatin assembly factor 1 subunit C.
    
  0.674
UV8b_1859
Alpha/gamma-adaptin-binding protein p34.
    
  0.662
UV8b_177
Small nuclear ribonucleoprotein Sm D2.
    
 0.661
Your Current Organism:
Ustilaginoidea virens
NCBI taxonomy Id: 1159556
Other names: Claviceps virens, MAFF 240994, MAFF 240995, TNS:F-18423, U. virens, Villosiclava virens, Villosiclava virens (Y. Sakurai ex Nakata) E. Tanaka & C. Tanaka 2009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.