STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UV8b_2328Red-like protein. (546 aa)    
Predicted Functional Partners:
UV8b_5369
Putative pre-mRNA-splicing factor prp1.
   
 0.972
UV8b_181
Microfibril-associated protein.
   
  0.968
UV8b_6696
Putative ribosomal elongation factor EF-2.
    
 
 0.910
UV8b_4260
Putative RNA binding protein.
   
 0.908
UV8b_2329
Uridine nucleosidase.
 
      0.899
UV8b_8202
U1 zinc finger family protein.
   
  0.849
UV8b_285
Putative C2H2 finger domain protein.
    
  0.845
UV8b_7432
Pre-mRNA-splicing factor RSE1.
    
   0.840
UV8b_3619
Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family.
    
  0.818
UV8b_7882
Putative G-patch domain protein.
    
  0.745
Your Current Organism:
Ustilaginoidea virens
NCBI taxonomy Id: 1159556
Other names: Claviceps virens, MAFF 240994, MAFF 240995, TNS:F-18423, U. virens, Villosiclava virens, Villosiclava virens (Y. Sakurai ex Nakata) E. Tanaka & C. Tanaka 2009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.