STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UV8b_2384Zinc finger protein RTS2. (348 aa)    
Predicted Functional Partners:
UV8b_4277
U2 snRNP component IST3.
   
   0.863
UV8b_7432
Pre-mRNA-splicing factor RSE1.
    
   0.840
UV8b_4426
U2 snRNP component prp10.
    
   0.840
UV8b_6638
Uncharacterized protein.
    
 0.820
UV8b_5686
Putative splicing factor 3a subunit 2.
    
 
 0.762
UV8b_137
Splicing factor 3A subunit 3.
    
 
 0.760
UV8b_6479
Putative cell cycle control protein (Cwf26).
   
   0.728
UV8b_4260
Putative RNA binding protein.
   
   0.728
UV8b_8118
UTP--glucose-1-phosphate uridylyltransferase.
 
      0.727
UV8b_6696
Putative ribosomal elongation factor EF-2.
    
   0.708
Your Current Organism:
Ustilaginoidea virens
NCBI taxonomy Id: 1159556
Other names: Claviceps virens, MAFF 240994, MAFF 240995, TNS:F-18423, U. virens, Villosiclava virens, Villosiclava virens (Y. Sakurai ex Nakata) E. Tanaka & C. Tanaka 2009
Server load: low (6%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.