STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UV8b_1054Outer membrane autotransporter barrel protein. (364 aa)    
Predicted Functional Partners:
UV8b_2981
Argininosuccinate synthase.
    
  0.788
UV8b_119
Fungal transcriptional regulatory protein.
  
 
 0.786
UV8b_6677
Proline dehydrogenase; Converts proline to delta-1-pyrroline-5-carboxylate.
     
 0.767
UV8b_726
Putative ornithine carbamoyl transferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.
  
 
  0.766
UV8b_6081
Werner syndrome helicase.
    
 0.716
UV8b_7358
Agmatinase; Belongs to the arginase family.
    
 0.715
UV8b_5385
Arginase; Belongs to the arginase family.
    
 0.715
UV8b_1246
4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 
 0.681
UV8b_8074
AIF-like mitochondrial oxidoreductase (Nfrl).
    
 0.641
UV8b_6413
Putative pyridine nucleotide-disulfide oxidoreductase AMID-like.
    
 0.641
Your Current Organism:
Ustilaginoidea virens
NCBI taxonomy Id: 1159556
Other names: Claviceps virens, MAFF 240994, MAFF 240995, TNS:F-18423, U. virens, Villosiclava virens, Villosiclava virens (Y. Sakurai ex Nakata) E. Tanaka & C. Tanaka 2009
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