STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UV8b_321Flavodoxin and radical SAM domain protein. (789 aa)    
Predicted Functional Partners:
UV8b_320
DNA repair and recombination protein RAD5B.
 
      0.873
UV8b_6496
Uroporphyrinogen decarboxylase.
    
  0.780
UV8b_505
tRNA wybutosine-synthesizing protein 2; S-adenosyl-L-methionine-dependent transferase that acts as a component of the wybutosine biosynthesis pathway. Wybutosine is a hyper modified guanosine with a tricyclic base found at the 3'-position adjacent to the anticodon of eukaryotic phenylalanine tRNA. Catalyzes the transfer of the alpha-amino-alpha-carboxypropyl (acp) group from S- adenosyl-L-methionine to the C-7 position of 4-demethylwyosine (imG-14) to produce wybutosine-86.
  
 
 0.750
UV8b_319
Cysteine dioxygenase.
 
      0.739
UV8b_4777
Transducin family protein.
   
 
 0.566
UV8b_5455
Protein-beta-aspartate methyltransferase.
   
    0.566
UV8b_6337
WD repeat protein.
   
    0.557
UV8b_3017
U3 small nucleolar ribonucleoprotein IMP4.
   
   0.550
UV8b_6453
Leucine carboxyl methyltransferase 2.
  
   
 0.536
UV8b_5106
tRNA wybutosine-synthesizing protein.
   
  
 0.494
Your Current Organism:
Ustilaginoidea virens
NCBI taxonomy Id: 1159556
Other names: Claviceps virens, MAFF 240994, MAFF 240995, TNS:F-18423, U. virens, Villosiclava virens, Villosiclava virens (Y. Sakurai ex Nakata) E. Tanaka & C. Tanaka 2009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.