UV8b_1709 protein (Ustilaginoidea virens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Cooccurrence

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[Homology]

Score

UV8b_1709

Uncharacterized protein. (438 aa)

Predicted Functional Partners:

UV8b_7189

0.539

UV8b_5905

0.539

UV8b_5729

0.539

UV8b_7070

0.539

UV8b_5941

0.539

UV8b_7566

0.539

UV8b_3942

0.539

UV8b_3609

0.539

UV8b_2735

0.539

UV8b_516

0.539

Your Current Organism:

Ustilaginoidea virens

NCBI taxonomy Id: 1159556
Other names: Claviceps virens, MAFF 240994, MAFF 240995, TNS:F-18423, U. virens, Villosiclava virens, Villosiclava virens (Y. Sakurai ex Nakata) E. Tanaka & C. Tanaka 2009

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
UV8b_1709	UV8b_2735	A0A063C7J6	A0A063C6Z5	Uncharacterized protein.	Glycoprotein x.	0.539
UV8b_1709	UV8b_3609	A0A063C7J6	A0A063C2Q6	Uncharacterized protein.	HEAT repeat containing protein.	0.539
UV8b_1709	UV8b_3942	A0A063C7J6	A0A063C0W2	Uncharacterized protein.	Uncharacterized membrane protein.	0.539
UV8b_1709	UV8b_516	A0A063C7J6	A0A063C7V6	Uncharacterized protein.	Uncharacterized protein.	0.539
UV8b_1709	UV8b_5729	A0A063C7J6	A0A063BRQ3	Uncharacterized protein.	Uncharacterized protein.	0.539
UV8b_1709	UV8b_5905	A0A063C7J6	A0A063BRL9	Uncharacterized protein.	Uncharacterized protein.	0.539
UV8b_1709	UV8b_5941	A0A063C7J6	A0A063BSJ3	Uncharacterized protein.	Uncharacterized protein.	0.539
UV8b_1709	UV8b_7070	A0A063C7J6	A0A063BSB8	Uncharacterized protein.	Glucan 1,3-beta-glucosidase GLUC78.	0.539
UV8b_1709	UV8b_7189	A0A063C7J6	A0A063BMQ4	Uncharacterized protein.	Uncharacterized protein.	0.539
UV8b_1709	UV8b_7566	A0A063C7J6	A0A063BTF5	Uncharacterized protein.	Uncharacterized protein.	0.539
UV8b_2735	UV8b_1709	A0A063C6Z5	A0A063C7J6	Glycoprotein x.	Uncharacterized protein.	0.539
UV8b_3609	UV8b_1709	A0A063C2Q6	A0A063C7J6	HEAT repeat containing protein.	Uncharacterized protein.	0.539
UV8b_3942	UV8b_1709	A0A063C0W2	A0A063C7J6	Uncharacterized membrane protein.	Uncharacterized protein.	0.539
UV8b_516	UV8b_1709	A0A063C7V6	A0A063C7J6	Uncharacterized protein.	Uncharacterized protein.	0.539
UV8b_5729	UV8b_1709	A0A063BRQ3	A0A063C7J6	Uncharacterized protein.	Uncharacterized protein.	0.539
UV8b_5905	UV8b_1709	A0A063BRL9	A0A063C7J6	Uncharacterized protein.	Uncharacterized protein.	0.539
UV8b_5941	UV8b_1709	A0A063BSJ3	A0A063C7J6	Uncharacterized protein.	Uncharacterized protein.	0.539
UV8b_7070	UV8b_1709	A0A063BSB8	A0A063C7J6	Glucan 1,3-beta-glucosidase GLUC78.	Uncharacterized protein.	0.539
UV8b_7189	UV8b_1709	A0A063BMQ4	A0A063C7J6	Uncharacterized protein.	Uncharacterized protein.	0.539
UV8b_7566	UV8b_1709	A0A063BTF5	A0A063C7J6	Uncharacterized protein.	Uncharacterized protein.	0.539

Network Stats

number of nodes:

11

number of edges:

55

average node degree:

10

avg. local clustering coefficient:

1

expected number of edges:

27

PPI enrichment p-value:

1.05e-06

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006412

Translation

11 of 104

1.5

3.1

6.57e-14

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0019843

rRNA binding

10 of 40

1.87

5.09

5.87e-16

GO:0003735

Structural constituent of ribosome

11 of 51

1.81

5.01

2.68e-17

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005840

Ribosome

11 of 57

1.76

4.78

1.76e-17

GO:0044391

Ribosomal subunit

4 of 12

2.0

2.62

2.79e-06

GO:0015934

Large ribosomal subunit

3 of 6

2.17

2.24

4.01e-05

Reference Publications (PubMed)

publication

(year) title

count in network

strength

signal

false discovery rate

PMID:34833134

(2021) Genome-Wide Investigation and Analysis of Microsatellites and Compound Microsatellites in Leptolyngbya-like Species, Cyanobacteria.

6 of 15

2.08

4.05

8.68e-10

PMID:32977771

(2020) Role of diversity-generating retroelements for regulatory pathway tuning in cyanobacteria.

2 of 2

2.47

1.47

0.0019

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:151

rRNA-binding

10 of 13

2.36

8.32

1.13e-19

CL:149

rRNA-binding

11 of 21

2.19

7.89

7.79e-21

CL:152

Mixed, incl. Large ribosomal subunit, and K Homology domain, type 2

6 of 7

2.41

5.29

1.63e-11

CL:165

KOW (Kyprides, Ouzounis, Woese) motif., and rRNA-binding

4 of 6

2.3

3.19

4.89e-07

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

cgc03010

Ribosome

11 of 53

1.79

5.02

6.52e-18

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005840

Ribosome

8 of 39

1.79

3.73

3.88e-11

GOCC:0044391

Ribosomal subunit

6 of 19

1.97

3.67

2.96e-09

GOCC:0022626

Cytosolic ribosome

4 of 16

1.87

2.28

1.04e-05

GOCC:0015934

Large ribosomal subunit

3 of 6

2.17

2.13

6.70e-05

GOCC:0022627

Cytosolic small ribosomal subunit

3 of 13

1.84

1.65

0.00036

(more ...)

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0699

rRNA-binding

10 of 39

1.88

5.26

1.55e-16

KW-0689

Ribosomal protein

11 of 57

1.76

4.76

2.68e-17

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