STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UV8b_1910mRNA binding post-transcriptional regulator. (209 aa)    
Predicted Functional Partners:
UV8b_1909
mRNA binding post-transcriptional regulator.
 
     0.937
UV8b_5730
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.
   
 0.908
UV8b_4775
mRNA splicing protein (Prp39).
   
 
 0.907
UV8b_1311
Nuclear cap-binding protein subunit 2.
    
 0.891
UV8b_7969
U1 small nuclear ribonucleoprotein.
    
 0.890
UV8b_8028
Cap binding protein.
    
 0.881
UV8b_3522
Translation Initiation Factor Eif4e; Belongs to the eukaryotic initiation factor 4E family.
    
 0.875
UV8b_4426
U2 snRNP component prp10.
   
 0.859
UV8b_6096
Splicing factor 3b subunit 4.
    
  0.850
UV8b_4414
Small nuclear ribonucleoprotein Sm D1.
   
 0.850
Your Current Organism:
Ustilaginoidea virens
NCBI taxonomy Id: 1159556
Other names: Claviceps virens, MAFF 240994, MAFF 240995, TNS:F-18423, U. virens, Villosiclava virens, Villosiclava virens (Y. Sakurai ex Nakata) E. Tanaka & C. Tanaka 2009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.