STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UV8b_1980WD repeat-containing protein 79. (444 aa)    
Predicted Functional Partners:
UV8b_2679
Centromere microtubule-binding protein cbf5.
    
 0.982
UV8b_4057
Putative H/ACA ribonucleoprotein complex subunit.
    
 0.968
UV8b_8030
TruB family pseudouridylate synthase containing protein.
    
 0.917
UV8b_2335
Telomerase reverse transcriptase; Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. It elongates telomeres. It is a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme.
    
 0.838
UV8b_584
Putative dock180 protein; Belongs to the DOCK family.
    
 0.769
UV8b_7752
40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.
    
 0.749
UV8b_4912
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
    
 0.749
UV8b_3341
60S ribosomal protein L8.
    
 0.749
UV8b_3368
Uncharacterized protein.
    
 0.749
UV8b_5469
DEAD-2 domain-containing protein.
   
 
 0.653
Your Current Organism:
Ustilaginoidea virens
NCBI taxonomy Id: 1159556
Other names: Claviceps virens, MAFF 240994, MAFF 240995, TNS:F-18423, U. virens, Villosiclava virens, Villosiclava virens (Y. Sakurai ex Nakata) E. Tanaka & C. Tanaka 2009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.