STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UV8b_1700Uncharacterized protein. (626 aa)    
Predicted Functional Partners:
UV8b_6101
Elongator protein 2.
 
      0.865
UV8b_7232
Ubiquitin.
   
 0.803
UV8b_4931
Thyroid hormone receptor interactor 12.
   
 
 0.743
UV8b_3217
Polyubiquitin.
    
 0.734
UV8b_4110
AN1-type zinc finger protein.
    
 0.734
UV8b_2776
Ubiquitin-activating enzyme E1 1; Belongs to the ubiquitin-activating E1 family.
    
 0.637
UV8b_3926
Elongation factor 3.
   
   0.632
UV8b_7670
Ubiquitin.
   
 0.613
UV8b_6541
Putative budding protein BOI2.
   
 0.613
UV8b_8385
Uncharacterized protein.
   
 0.613
Your Current Organism:
Ustilaginoidea virens
NCBI taxonomy Id: 1159556
Other names: Claviceps virens, MAFF 240994, MAFF 240995, TNS:F-18423, U. virens, Villosiclava virens, Villosiclava virens (Y. Sakurai ex Nakata) E. Tanaka & C. Tanaka 2009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.