STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UV8b_1730Essential subunit of the histone deacetylase Rpd3S complex. (454 aa)    
Predicted Functional Partners:
UV8b_1729
Essential subunit of the histone deacetylase Rpd3S complex.
 
     0.935
UV8b_2116
Histone deacetylase RpdA/Rpd3.
   
 
 0.922
UV8b_1728
Curved DNA-binding protein.
 
      0.899
UV8b_7551
Chromatin assembly factor 1 subunit C.
    
 
 0.861
UV8b_5260
Histone acetylase complex subunit MRG15-2.
    
 
 0.848
UV8b_5261
Keratinolytic protein.
    
 
 0.848
UV8b_6710
Putative transcription regulatory protein.
   
 
 0.801
UV8b_2081
FAS1 domain-containing protein.
   
 
 0.801
UV8b_2973
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 
 0.746
UV8b_135
PHD transcription factor.
    
 
 0.687
Your Current Organism:
Ustilaginoidea virens
NCBI taxonomy Id: 1159556
Other names: Claviceps virens, MAFF 240994, MAFF 240995, TNS:F-18423, U. virens, Villosiclava virens, Villosiclava virens (Y. Sakurai ex Nakata) E. Tanaka & C. Tanaka 2009
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.