STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UV8b_2440Urease accessory protein UreD. (330 aa)    
Predicted Functional Partners:
UV8b_4183
Amidophosphoribosyltransferase.
  
 0.955
UV8b_7470
Putative bifunctional purine biosynthetic protein Ade1.
  
 0.954
UV8b_6517
C-1-tetrahydrofolate synthase.
  
 0.926
UV8b_986
Adenylosuccinate lyase.
  
 0.911
UV8b_987
Adenylosuccinate lyase.
  
 0.911
UV8b_2439
RNA polymerase iii rpc4.
 
      0.899
UV8b_6664
Phosphoribosylglycinamide formyltransferase.
  
 0.879
UV8b_24
Formyltetrahydrofolate deformylase.
  
 0.879
UV8b_3320
Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.
  
 0.872
UV8b_3120
Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.
  
 0.872
Your Current Organism:
Ustilaginoidea virens
NCBI taxonomy Id: 1159556
Other names: Claviceps virens, MAFF 240994, MAFF 240995, TNS:F-18423, U. virens, Villosiclava virens, Villosiclava virens (Y. Sakurai ex Nakata) E. Tanaka & C. Tanaka 2009
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.