STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UV8b_377Putative C2H2 finger domain protein. (781 aa)    
Predicted Functional Partners:
UV8b_1367
Putative RNA polymerase III transcription factor TFIIIC subunit (Tfc4).
    
 0.701
UV8b_4145
Putative helicase-DNA-binding protein.
    
 0.694
UV8b_7250
Uncharacterized protein.
    
  0.688
UV8b_8165
37S ribosomal protein S11.
    
  0.687
UV8b_1467
RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.686
UV8b_2661
40S ribosomal protein S29.
    
  0.683
UV8b_6572
37S ribosomal protein Mrp17.
    
  0.682
UV8b_5085
Ribosomal protein S16.
   
  0.682
UV8b_4537
37S ribosomal protein MRP4.
   
  0.682
UV8b_5236
Ribosomal protein S15-like protein.
   
  0.682
Your Current Organism:
Ustilaginoidea virens
NCBI taxonomy Id: 1159556
Other names: Claviceps virens, MAFF 240994, MAFF 240995, TNS:F-18423, U. virens, Villosiclava virens, Villosiclava virens (Y. Sakurai ex Nakata) E. Tanaka & C. Tanaka 2009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.