STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UV8b_664HMG box protein. (702 aa)    
Predicted Functional Partners:
UV8b_5623
Protein disulfide-isomerase.
    
   0.772
UV8b_4905
Extracellular serine-rich protein.
    
 0.728
UV8b_6489
HMG box protein.
    
0.726
UV8b_5528
Uracil phosphoribosyltransferase.
    
 0.673
UV8b_5849
Nitrogen response regulator.
    
 0.654
UV8b_6163
Nicotinamide riboside kinase 1.
 
  
 0.637
UV8b_3040
Ubiquitin-conjugating enzyme E2-18 kDa; Belongs to the ubiquitin-conjugating enzyme family.
    
   0.635
UV8b_663
DYNACTIN ro-3.
 
      0.596
UV8b_7734
SNF2-family ATP dependent chromatin remodeling factor snf21.
    
 0.592
UV8b_7427
cAMP-dependent protein kinase catalytic subunit.
    
 0.582
Your Current Organism:
Ustilaginoidea virens
NCBI taxonomy Id: 1159556
Other names: Claviceps virens, MAFF 240994, MAFF 240995, TNS:F-18423, U. virens, Villosiclava virens, Villosiclava virens (Y. Sakurai ex Nakata) E. Tanaka & C. Tanaka 2009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.