STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UV8b_49Transcriptional activator xlnr. (848 aa)    
Predicted Functional Partners:
UV8b_88
DNA replication factor A subunit Ssb3.
 
  
  0.708
UV8b_7392
Uncharacterized protein.
    
 0.624
UV8b_48
Short chain dehydrogenase family protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
   0.588
UV8b_7324
Carbon response regulator.
    
 0.571
UV8b_3459
Glucose galactose transporter.
 
  
 
 0.564
UV8b_7715
DUF4203 domain-containing protein.
    
  0.560
UV8b_2117
26S proteasome regulatory subunit.
    
  0.554
UV8b_7245
Quinate repressor.
     
 0.542
UV8b_6330
Putative WD40 repeat protein CreC.
    
 0.516
UV8b_3011
Putative ubiquitin-like modifier SUMO.
    
  0.510
Your Current Organism:
Ustilaginoidea virens
NCBI taxonomy Id: 1159556
Other names: Claviceps virens, MAFF 240994, MAFF 240995, TNS:F-18423, U. virens, Villosiclava virens, Villosiclava virens (Y. Sakurai ex Nakata) E. Tanaka & C. Tanaka 2009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.