Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CCO05098.1 | CCO05100.1 | RBI_I01386 | RBI_I01388 | Hypothetical protein predicted by Glimmer/Critica. | Hypothetical protein. | 0.466 |
CCO05098.1 | citB | RBI_I01386 | RBI_I01387 | Hypothetical protein predicted by Glimmer/Critica. | Aconitate hydratase. | 0.773 |
CCO05098.1 | hisA | RBI_I01386 | RBI_I01389 | Hypothetical protein predicted by Glimmer/Critica. | 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase; Belongs to the HisA/HisF family. | 0.460 |
CCO05098.1 | icd | RBI_I01386 | RBI_I01385 | Hypothetical protein predicted by Glimmer/Critica. | Isocitrate dehydrogenase [NADP]; Belongs to the isocitrate and isopropylmalate dehydrogenases family. | 0.532 |
CCO05100.1 | CCO05098.1 | RBI_I01388 | RBI_I01386 | Hypothetical protein. | Hypothetical protein predicted by Glimmer/Critica. | 0.466 |
CCO05100.1 | citB | RBI_I01388 | RBI_I01387 | Hypothetical protein. | Aconitate hydratase. | 0.498 |
CCO05100.1 | hisA | RBI_I01388 | RBI_I01389 | Hypothetical protein. | 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase; Belongs to the HisA/HisF family. | 0.762 |
citB | CCO05098.1 | RBI_I01387 | RBI_I01386 | Aconitate hydratase. | Hypothetical protein predicted by Glimmer/Critica. | 0.773 |
citB | CCO05100.1 | RBI_I01387 | RBI_I01388 | Aconitate hydratase. | Hypothetical protein. | 0.498 |
citB | hisA | RBI_I01387 | RBI_I01389 | Aconitate hydratase. | 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase; Belongs to the HisA/HisF family. | 0.460 |
citB | icd | RBI_I01387 | RBI_I01385 | Aconitate hydratase. | Isocitrate dehydrogenase [NADP]; Belongs to the isocitrate and isopropylmalate dehydrogenases family. | 0.994 |
hisA | CCO05098.1 | RBI_I01389 | RBI_I01386 | 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase; Belongs to the HisA/HisF family. | Hypothetical protein predicted by Glimmer/Critica. | 0.460 |
hisA | CCO05100.1 | RBI_I01389 | RBI_I01388 | 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase; Belongs to the HisA/HisF family. | Hypothetical protein. | 0.762 |
hisA | citB | RBI_I01389 | RBI_I01387 | 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase; Belongs to the HisA/HisF family. | Aconitate hydratase. | 0.460 |
icd | CCO05098.1 | RBI_I01385 | RBI_I01386 | Isocitrate dehydrogenase [NADP]; Belongs to the isocitrate and isopropylmalate dehydrogenases family. | Hypothetical protein predicted by Glimmer/Critica. | 0.532 |
icd | citB | RBI_I01385 | RBI_I01387 | Isocitrate dehydrogenase [NADP]; Belongs to the isocitrate and isopropylmalate dehydrogenases family. | Aconitate hydratase. | 0.994 |