STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfhOBacterial membrane protein, YfhO family. (909 aa)    
Predicted Functional Partners:
CCO05429.1
Putative cell wall teichoic acid glycosylation protein.
 
  
 0.660
CCO06365.1
Hypothetical protein.
 
     0.538
CCO03809.1
Hypothetical protein predicted by Glimmer/Critica.
  
     0.508
ppiD-2
Peptidyl-prolyl cis-trans isomerase B (cyclophilin B); PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
       0.508
CCO04235.1
Putative Spore germination protein AB.
  
     0.487
ppiB
Putative peptidyl-prolyl cis-trans isomerase Short=PPIase; Short=Rotamase.
  
     0.461
CCO04361.1
Hypothetical protein.
  
     0.453
CCO04534.1
Extracellular solute-binding protein.
  
     0.444
CCO05107.1
Hypothetical protein.
  
     0.419
CCO03900.1
Conserved hypothetical protein.
  
     0.414
Your Current Organism:
Ruminococcus bicirculans
NCBI taxonomy Id: 1160721
Other names: R. bicirculans, Ruminococcus sp. 80/3, strain 80/3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.