STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCO06280.1Hypothetical phage protein. (386 aa)    
Predicted Functional Partners:
CCO06282.1
Putative minor tail protein.
 
     0.887
CCO06281.1
Hypothetical phage protein.
       0.782
CCO06278.1
Hypothetical protein predicted by Glimmer/Critica.
       0.762
CCO06279.1
Hypothetical protein predicted by Glimmer/Critica.
       0.762
CCO03882.1
Hypothetical protein predicted by Glimmer/Critica.
  
     0.718
CCO06275.1
Endolysin (Glycoside Hydrolase Family 25 protein).
       0.702
CCO06276.1
Putative holin.
       0.669
CCO06277.1
Hypothetical protein predicted by Glimmer/Critica.
       0.669
CCO06274.1
Hypothetical protein predicted by Glimmer/Critica.
       0.659
CCO03900.1
Conserved hypothetical protein.
  
     0.619
Your Current Organism:
Ruminococcus bicirculans
NCBI taxonomy Id: 1160721
Other names: R. bicirculans, Ruminococcus sp. 80/3, strain 80/3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.