STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CM19_08125Bacterio-opsin activator; Derived by automated computational analysis using gene prediction method: Protein Homology. (216 aa)    
Predicted Functional Partners:
CM19_05730
AbrB family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.670
CM19_12255
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.627
CM19_11745
Bacterio-opsin activator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.623
CM19_01545
RNA polymerase sigma70; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.572
CM19_08135
4-hydroxyphenylacetate 3-hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.572
CM19_10785
ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.572
CM19_08130
3,4-dihydroxyphenylacetate 2,3-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.569
CM19_02420
Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
  
     0.567
CM19_08120
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.567
CM19_12020
AbrB family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.566
Your Current Organism:
Acidianus copahuensis
NCBI taxonomy Id: 1160895
Other names: Acidianus sp. ALE1, C. Acidianus copahuensis, Candidatus Acidianus copahuensis
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