STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rcsAColanic acid capsular biosynthesis activation protein A; Component of the Rcs signaling system, which controls transcription of numerous genes. Binds to DNA to regulate expression of genes. (229 aa)    
Predicted Functional Partners:
barA
Sensor histidine kinase/response regulator.
  
 0.994
yojN
Putative two-component system sensor kinase; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsD is a phosphotransfer intermediate between the sensor kinase RcsC and the response regulator RcsB. It acquires a phosphoryl group from RcsC and transfers it to RcsB.
  
 
  0.973
arcB
Aerobic respiration sensor-response protein.
  
 0.929
hrpX
Sensor kinase HrpX.
  
 0.898
sseB
Protein sseB.
  
 
  0.837
yegE
Putative protein yegE.
 
 
 0.806
rcsC
Two component sensor kinase/response regulator protein RcsC; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsC functions as a membrane- associated protein kinase that phosphorylates RcsD in response to environmental signals. The phosphoryl group is then transferred to the response regulator RcsB.
 
 0.772
ybaY
Putative lipoprotein ybaY precursor.
  
     0.766
yfeC
Putative protein yfeC.
  
    0.755
ygdR-2
Putative lipoprotein ygdI precursor.
  
     0.749
Your Current Organism:
Erwinia piriflorinigrans
NCBI taxonomy Id: 1161919
Other names: E. piriflorinigrans CFBP 5888, Erwinia piriflorinigrans CECT 7348, Erwinia piriflorinigrans CFBP 5888, Erwinia piriflorinigrans str. CFBP 5888, Erwinia piriflorinigrans strain CFBP 5888, Erwinia sp. CECT 7348
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