STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LFE_0092Putative arsenite transporter ATPase-like protein. (598 aa)    
Predicted Functional Partners:
arsD
Putative arsenical resistance operon transacting repressor.
   
 0.991
LFE_2455
Putative orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP).
    
 
 0.770
LFE_0090
Putative protein tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
    
 0.761
LFE_1365
UbiE/COQ5 methyltransferase.
 
    
 0.719
LFE_0089
Putative arsenic resistance transcriptional regulator.
 
   
 0.574
LFE_0351
Hypothetical protein.
  
 
 0.472
LFE_0818
Putative arsenical membrane pump protein.
 
   
 0.451
LFE_2088
Putative SAM-dependent methyltransferase.
   
 0.448
LFE_2365
Putative TPR-domain containing protein.
    
 0.433
Your Current Organism:
Leptospirillum ferrooxidans
NCBI taxonomy Id: 1162668
Other names: L. ferrooxidans C2-3, Leptospirillum ferrooxidans C2-3, Leptospirillum ferrooxidans str. C2-3, Leptospirillum ferrooxidans strain C2-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.