STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LFE_0186Putative diguanylate cyclase. (388 aa)    
Predicted Functional Partners:
LFE_2464
Putative PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase.
   0.979
LFE_1157
Putative PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase.
   0.977
LFE_1810
Putative diguanylate phosphodiesterase.
 
    0.917
LFE_0574
Putative diguanylate phosphodiesterase.
 
 0.881
LFE_1811
Putative diguanylate phosphodiesterase.
  
    0.683
LFE_1369
Putative two-component system, OmpR family, sensor kinase.
 
  
 0.682
LFE_0592
Putative metal dependent phosphohydrolase.
 
 0.609
LFE_2316
Putative PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase.
 
 
0.583
LFE_1010
Putative signal transduction histidine kinase with CheB and CheR activity.
 
 
0.566
LFE_2049
Putative metal dependent phosphohydrolase.
 
 0.529
Your Current Organism:
Leptospirillum ferrooxidans
NCBI taxonomy Id: 1162668
Other names: L. ferrooxidans C2-3, Leptospirillum ferrooxidans C2-3, Leptospirillum ferrooxidans str. C2-3, Leptospirillum ferrooxidans strain C2-3
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