STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LFE_0300Hypothetical protein. (79 aa)    
Predicted Functional Partners:
LFE_0301
Hypothetical protein.
 
     0.947
LFE_1316
Putative PilT domaincontaining protein.
 
     0.775
LFE_0119
Putative ABC phosphate transporter; Belongs to the ABC transporter superfamily.
  
  
 0.628
LFE_0120
Putative oligopeptide/dipeptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
  
  
 0.628
LFE_0056
Putative oligopeptide ABC transporter, permease.
  
  
 0.627
LFE_0399
Putative oligopeptide ABC transporter.
  
  
 0.627
LFE_1379
Hypothetical protein.
 
     0.571
LFE_0055
Putative transporter, extracellular solute binding protein family 5.
  
 
 0.553
LFE_1306
Transcriptional regulator-like protein.
  
     0.543
abrB
Putative transcriptional regulator.
  
     0.501
Your Current Organism:
Leptospirillum ferrooxidans
NCBI taxonomy Id: 1162668
Other names: L. ferrooxidans C2-3, Leptospirillum ferrooxidans C2-3, Leptospirillum ferrooxidans str. C2-3, Leptospirillum ferrooxidans strain C2-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.