STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LFE_0659Putative 20S proteasome alpha subunit. (243 aa)    
Predicted Functional Partners:
LFE_0656
Putative AAA-family ATPase.
 
 0.988
LFE_0658
Putative 20S proteasome beta subunit.
 
  
  0.970
LFE_0660
Hypothetical protein.
 
   
 0.945
LFE_1735
Hypothetical protein.
   
 0.910
LFE_0657
Putative proteasome component.
 
   
 0.892
LFE_0387
Putative peptidase S1C, Do.
    
 0.601
LFE_0693
Hypothetical protein.
  
     0.550
ilvD
Dihydroxyacid dehydratase/phosphogluconate dehydratase; Belongs to the IlvD/Edd family.
      
 0.530
ilvD-2
Dihydroxyacid dehydratase; Belongs to the IlvD/Edd family.
      
 0.530
LFE_1941
Hypothetical protein.
  
     0.501
Your Current Organism:
Leptospirillum ferrooxidans
NCBI taxonomy Id: 1162668
Other names: L. ferrooxidans C2-3, Leptospirillum ferrooxidans C2-3, Leptospirillum ferrooxidans str. C2-3, Leptospirillum ferrooxidans strain C2-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.