STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LFE_0700Cytochrome c, class I. (321 aa)    
Predicted Functional Partners:
LFE_2301
Gluconate 2-dehydrogenase.
  
 
 0.918
LFE_0699
Cytochrome b/b6.
 
   0.904
LFE_2036
Cytochrome 579.
 
 
 0.904
LFE_0698
Cytochrome b/b6.
 
   0.885
LFE_0697
Rieske ironsulfur family protein.
 
 
 0.875
LFE_0673
Cytochrome c oxidase.
  
 
 0.848
LFE_0675
Cytochrome c oxidase.
  
 
 0.848
LFE_0766
Cytochrome c oxidase cbb3 type, subunit I.
  
 
 0.848
LFE_1556
Cytochrome b/b6.
 
   0.719
LFE_1557
Putative rieske ironsulfur family protein.
 
 
 0.706
Your Current Organism:
Leptospirillum ferrooxidans
NCBI taxonomy Id: 1162668
Other names: L. ferrooxidans C2-3, Leptospirillum ferrooxidans C2-3, Leptospirillum ferrooxidans str. C2-3, Leptospirillum ferrooxidans strain C2-3
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.