STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LFE_0745Putative glycoside hydrolase, family 15. (661 aa)    
Predicted Functional Partners:
LFE_0743
Putative glycoside hydrolase, family 15.
 
  
 
0.951
LFE_1034
Putative trehalose synthase.
    
 0.927
LFE_1035
Trehalose synthase.
    
 0.927
LFE_2208
Putative glycoside hydrolase, family 57; Belongs to the glycosyl hydrolase 57 family.
 
  
  0.924
LFE_2205
Putative 4-alpha-glucanotransferase.
  
 
  0.909
LFE_1154
Glycogen/starch/alphaglucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
   
 
 0.906
LFE_1816
Putative alpha-glucan phosphorylase.
   
 
 0.906
lepA
GTP-binding protein; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.
       0.511
LFE_0747
Putative signal peptidase I; Belongs to the peptidase S26 family.
       0.511
hisS
Putative Histidyl-tRNA synthetase.
       0.463
Your Current Organism:
Leptospirillum ferrooxidans
NCBI taxonomy Id: 1162668
Other names: L. ferrooxidans C2-3, Leptospirillum ferrooxidans C2-3, Leptospirillum ferrooxidans str. C2-3, Leptospirillum ferrooxidans strain C2-3
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