STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LFE_1499Putative outer membrane efflux protein. (456 aa)    
Predicted Functional Partners:
hlyD-9
Putative secretion protein.
 
   0.909
LFE_2196
Hypothetical protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  0.875
LFE_0424
Putative efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  0.874
hlyD-12
Putative secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  0.865
hlyD-3
Putative secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
   
  0.846
LFE_2195
Putative outer membrane efflux protein.
  
     0.693
LFE_1500
Putative cytochrome c-554.
       0.689
LFE_1497
Putative major facilitator superfamily transporter.
 
    0.678
LFE_1496
Hypothetical protein.
       0.620
hlyD-7
Putative secretion protein.
  
   0.609
Your Current Organism:
Leptospirillum ferrooxidans
NCBI taxonomy Id: 1162668
Other names: L. ferrooxidans C2-3, Leptospirillum ferrooxidans C2-3, Leptospirillum ferrooxidans str. C2-3, Leptospirillum ferrooxidans strain C2-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.