STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LFE_1500Putative cytochrome c-554. (207 aa)    
Predicted Functional Partners:
LFE_0824
Putative cytochrome c peroxidase.
  
 
 0.784
LFE_2301
Gluconate 2-dehydrogenase.
  
 
 0.783
LFE_2036
Cytochrome 579.
  
 
 0.774
LFE_1660
Hypothetical protein.
   
   0.743
hlyD-9
Putative secretion protein.
       0.689
LFE_1499
Putative outer membrane efflux protein.
       0.689
LFE_0337
Putative TonB-dependent receptor.
  
  
 0.598
LFE_1496
Hypothetical protein.
       0.556
LFE_1497
Putative major facilitator superfamily transporter.
       0.556
LFE_2254
Hypothetical protein.
 
     0.483
Your Current Organism:
Leptospirillum ferrooxidans
NCBI taxonomy Id: 1162668
Other names: L. ferrooxidans C2-3, Leptospirillum ferrooxidans C2-3, Leptospirillum ferrooxidans str. C2-3, Leptospirillum ferrooxidans strain C2-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.