STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LFE_1716Putative TonB protein. (379 aa)    
Predicted Functional Partners:
LFE_0330
Putative biopolymer transport protein.
  
 
 0.850
LFE_1272
Biopolymer transport protein ExbD/TolR.
  
 
 0.850
LFE_0337
Putative TonB-dependent receptor.
  
 
 0.844
LFE_0334
tonB-dependent receptor.
   
 
 0.790
LFE_1713
Hypothetical protein.
       0.773
LFE_1714
Hypothetical protein.
       0.773
LFE_1715
Putative lytic transglycosylase.
       0.773
LFE_1273
Putative MotA/TolQ/ExbB proton channel.
 
 
 0.716
LFE_0331
Biopolymer transport protein.
  
 
 0.667
rsmA
Putative dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
 
     0.638
Your Current Organism:
Leptospirillum ferrooxidans
NCBI taxonomy Id: 1162668
Other names: L. ferrooxidans C2-3, Leptospirillum ferrooxidans C2-3, Leptospirillum ferrooxidans str. C2-3, Leptospirillum ferrooxidans strain C2-3
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