STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LFE_2253Putative polysaccharide deacetylase. (266 aa)    
Predicted Functional Partners:
LFE_2252
Putative glycosyltransferase.
  
  
 0.931
LFE_2250
Putative polysaccharide deacetylase.
 
  
0.827
LFE_2251
Putative glycosyl transferase, group 1.
  
  
 0.777
LFE_2248
Putative lipopolysaccharide biosynthesis protein.
 
   
 0.695
LFE_2249
Putative o-antigen polymerase.
 
   
 0.647
LFE_2254
Hypothetical protein.
  
    0.551
LFE_2088
Putative SAM-dependent methyltransferase.
  
  
 0.517
LFE_1431
Putative transposase.
  
  
 0.507
LFE_2255
Putative periplasmic sensor signal transduction histidine kinase.
  
  
 0.506
LFE_2246
Putative polysaccharide export protein.
     
 0.478
Your Current Organism:
Leptospirillum ferrooxidans
NCBI taxonomy Id: 1162668
Other names: L. ferrooxidans C2-3, Leptospirillum ferrooxidans C2-3, Leptospirillum ferrooxidans str. C2-3, Leptospirillum ferrooxidans strain C2-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.