STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LFE_2405Iron-sulfur cluster assembly accessory protein; Belongs to the HesB/IscA family. (130 aa)    
Predicted Functional Partners:
nifS-2
Putative cysteine desulfurase.
  
  
 0.834
LFE_2406
Hypothetical protein.
   
   0.767
LFE_2407
Hypothetical protein.
  
    0.757
LFE_2409
Putative DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
       0.752
LFE_2410
Hypothetical protein.
       0.752
hscB
HscB chaperone.
  
 
 0.713
LFE_1848
Nitrogen fixation protein, NifU-like protein; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.
  
  
 0.703
LFE_2404
Ferredoxin.
  
  
 0.668
LFE_2403
Putative FeMo cofactor biosynthesis protein NifB, Radical SAM superfamily enzyme.
  
  
 0.633
nifZ
Iron-sulfur cofactor synthesis protein.
  
  
 0.627
Your Current Organism:
Leptospirillum ferrooxidans
NCBI taxonomy Id: 1162668
Other names: L. ferrooxidans C2-3, Leptospirillum ferrooxidans C2-3, Leptospirillum ferrooxidans str. C2-3, Leptospirillum ferrooxidans strain C2-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.