STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TOPH_05119Nefa_Nip30_N domain-containing protein. (236 aa)    
Predicted Functional Partners:
TOPH_04211
Pre-mRNA-splicing factor SYF1.
    
   0.823
TOPH_03779
Pre-mRNA-splicing factor spp42.
    
   0.823
TOPH_02314
Pre-mRNA-splicing factor CEF1.
    
   0.729
TOPH_02315
Pre-mRNA-splicing factor cef-1.
    
   0.729
TOPH_08050
RNA-binding protein 8A-B.
   
   0.639
TOPH_06465
Pre-mRNA-splicing factor SPF27.
   
   0.634
TOPH_01441
ATP-dependent RNA helicase FAL1; Belongs to the DEAD box helicase family.
   
   0.634
TOPH_01546
Uncharacterized protein C31G5.21.
    
 
 0.629
TOPH_07744
Pre-mRNA-splicing factor cwf17.
    
   0.627
TOPH_06886
U2 small nuclear ribonucleoprotein A.
    
   0.627
Your Current Organism:
Tolypocladium ophioglossoides
NCBI taxonomy Id: 1163406
Other names: Elaphocordyceps ophioglossoides CBS 100239, Elaphocordyceps ophioglossoides CBS100239, T. ophioglossoides CBS 100239, Tolypocladium ophioglossoides CBS 100239
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.