STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TOPH_04572Pre-mRNA-processing factor 19. (507 aa)    
Predicted Functional Partners:
TOPH_06465
Pre-mRNA-splicing factor SPF27.
   
 0.997
TOPH_04935
Pre-mRNA-splicing factor prp46.
   
 0.997
TOPH_04211
Pre-mRNA-splicing factor SYF1.
   
 0.997
TOPH_02510
Pre-mRNA-splicing factor; Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome.
    
 0.996
TOPH_01085
Peptidyl-prolyl cis-trans isomerase E.
    
 0.996
TOPH_06179
Pre-mRNA-splicing factor ISY1.
    
 0.995
TOPH_03185
Pre-mRNA-splicing factor cwc15.
    
 0.995
TOPH_00947
Peptidyl-prolyl isomerase CWC27.
    
 0.990
TOPH_04887
Pre-mRNA-splicing factor clf1.
   
 
 0.989
TOPH_04357
Pre-mRNA-splicing factor cwf10.
   
 
 0.989
Your Current Organism:
Tolypocladium ophioglossoides
NCBI taxonomy Id: 1163406
Other names: Elaphocordyceps ophioglossoides CBS 100239, Elaphocordyceps ophioglossoides CBS100239, T. ophioglossoides CBS 100239, Tolypocladium ophioglossoides CBS 100239
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.