STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UU7_12079RfaL protein; COG3307 Lipid A core - O-antigen ligase and related enzymes. (382 aa)    
Predicted Functional Partners:
UU7_12074
COG0438 Glycosyltransferase.
  
 
  0.814
UU7_02757
COG0859 ADP-heptose:LPS heptosyltransferase.
 
 
 0.759
UU7_06563
3-deoxy-D-manno-octulosonic-acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
    
 0.655
UU7_09070
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; COG0836 Mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.576
UU7_09185
Hypothetical protein; COG1216 Predicted glycosyltransferases.
  
 
 0.575
kdkA
3-deoxy-D-manno-octulosonic-acid kinase; Catalyzes the ATP-dependent phosphorylation of the 3-deoxy-D- manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position; Belongs to the protein kinase superfamily. KdkA/RfaP family.
 
  
  0.539
UU7_01072
Glycosyl transferase family protein; COG0859 ADP-heptose:LPS heptosyltransferase.
  
 
 0.526
hisB
Imidazole glycerol-phosphate dehydratase/histidinol phosphatase; COG0241 Histidinol phosphatase and related phosphatases; In the C-terminal section; belongs to the imidazoleglycerol-phosphate dehydratase family.
    
  0.496
UU7_07993
COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.
  
  
 0.475
UU7_13903
COG2148 Sugar transferases involved in lipopolysaccharide synthesis.
  
  
 0.449
Your Current Organism:
Rhodanobacter spathiphylli
NCBI taxonomy Id: 1163407
Other names: R. spathiphylli B39, Rhodanobacter spathiphylli B39, Rhodanobacter spathiphylli str. B39, Rhodanobacter spathiphylli strain B39
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.