STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFH42419.1Transcriptional regulator, AbrB family. (141 aa)    
Predicted Functional Partners:
AFH42769.1
Threonine dehydratase.
  
  
 0.841
AFH42776.1
Pyridoxal-5'-phosphate-dependent protein beta subunit.
  
  
 0.773
AFH43157.1
Threonine synthase.
  
  
 0.684
AFH42420.1
DUF72 domain containing protein.
       0.663
AFH42666.1
Glu/Leu/Phe/Val dehydrogenase, C terminal.
  
  
 0.625
AFH42715.1
Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
  
 0.625
AFH42421.1
Hypothetical protein.
       0.581
pcn
Proliferating cell nuclear antigen, PCNA; Sliding clamp subunit that acts as a moving platform for DNA processing. Responsible for tethering the catalytic subunit of DNA polymerase and other proteins to DNA during high-speed replication. Belongs to the PCNA family.
   
   0.567
AFH42418.1
Metalloexopeptidase, family M20.
     
 0.519
AFH42543.1
Bifunctional GMP synthase/glutamine amidotransferase protein.
  
    0.462
Your Current Organism:
Fervidicoccus fontis
NCBI taxonomy Id: 1163730
Other names: Desulfurococcales archaeon Kam940, F. fontis Kam940, Fervidicoccus fontis DSM 19380, Fervidicoccus fontis Kam940, Fervidicoccus fontis str. Kam940, Fervidicoccus fontis strain Kam940
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.