STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFH43058.1DUF521 domain containing protein. (400 aa)    
Predicted Functional Partners:
AFH43059.1
Putative aconitase, subunit.
 
 
 0.985
AFH43057.1
Putative 3-octaprenyl-4-hydroxybenzoate carboxylase.
 
     0.893
AFH43062.1
Hypothetical protein.
       0.523
AFH43060.1
Cobalamin (vitamin B12) biosynthesis CbiM protein.
       0.522
AFH43061.1
Hypothetical protein.
       0.522
AFH43063.1
Cobalt transport ATP-binding protein (cbiO).
       0.502
AFH43056.1
Putative transcription regulator, containing DNA-binding HTH domain.
       0.499
AFH43054.1
Archaeal enzymes of ATP-grasp superfamily.
  
     0.422
AFH42288.1
Putative signal transduction protein with CBS domains.
  
     0.414
Your Current Organism:
Fervidicoccus fontis
NCBI taxonomy Id: 1163730
Other names: Desulfurococcales archaeon Kam940, F. fontis Kam940, Fervidicoccus fontis DSM 19380, Fervidicoccus fontis Kam940, Fervidicoccus fontis str. Kam940, Fervidicoccus fontis strain Kam940
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