STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFH43234.1ATP dependent DNA ligase. (387 aa)    
Predicted Functional Partners:
AFH43233.1
DNA-binding protein containing PIN domain-like protein.
 
     0.760
AFH42721.1
TatD-related deoxyribonuclease.
  
   
 0.559
rtcB
UPF0027 protein PF1615; Belongs to the RtcB family.
     
 0.533
AFH42288.1
Putative signal transduction protein with CBS domains.
 
     0.531
AFH42475.1
Hypothetical protein.
  
     0.489
AFH42402.1
Family B-type DNA polymerase.
 
    0.487
AFH42287.1
FOG CBS domain protein.
 
     0.459
srp19
Signal recognition particle protein Srp19; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds directly to 7S RNA and mediates binding of the 54 kDa subunit of the SRP.
  
     0.456
AFH42290.1
CBS domain containing protein.
 
     0.429
AFH42706.1
Hypothetical protein.
  
     0.427
Your Current Organism:
Fervidicoccus fontis
NCBI taxonomy Id: 1163730
Other names: Desulfurococcales archaeon Kam940, F. fontis Kam940, Fervidicoccus fontis DSM 19380, Fervidicoccus fontis Kam940, Fervidicoccus fontis str. Kam940, Fervidicoccus fontis strain Kam940
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.