STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HCD_00365COG4174 ABC-type uncharacterized transport system, permease component. (348 aa)    
Predicted Functional Partners:
HCD_00370
Hypothetical protein; COG4166 ABC-type oligopeptide transport system, periplasmic component.
 
  
 0.971
HCD_02590
Oligopeptide permease integral membrane protein; COG4239 ABC-type uncharacterized transport system, permease component.
  
 0.936
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.837
HCD_02595
Oligopeptide permease ATPase protein; COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase; Belongs to the ABC transporter superfamily.
 
     0.791
HCD_00380
Biotin synthesis protein BioC; COG0500 SAM-dependent methyltransferases.
       0.691
aroE
Shikimate 5-dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
       0.658
HCD_00345
COG1466 DNA polymerase III, delta subunit.
       0.565
HCD_00360
Hypothetical protein.
       0.565
HCD_00400
COG1714 Predicted membrane protein/domain.
       0.560
pyrE
Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
       0.559
Your Current Organism:
Helicobacter cetorum MIT995656
NCBI taxonomy Id: 1163745
Other names: H. cetorum MIT 99-5656, Helicobacter cetorum MIT 99-5656, Helicobacter cetorum str. MIT 99-5656, Helicobacter cetorum strain MIT 99-5656, Helicobacter sp. MIT 99-5656
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.