STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HCD_07540Hypothetical protein. (901 aa)    
Predicted Functional Partners:
HCD_00675
Type II R-M system restriction endonuclease.
  
     0.649
HCD_06105
COG4731 Uncharacterized protein conserved in bacteria.
  
     0.626
HCD_04115
COG1538 Outer membrane protein.
  
     0.603
HCD_05885
Vacuolating cytotoxin VacA-like protein.
  
     0.601
HCD_06160
Hypothetical protein; COG3307 Lipid A core - O-antigen ligase and related enzymes.
  
     0.575
HCD_02490
Hypothetical protein; COG3842 ABC-type spermidine/putrescine transport systems, ATPase components.
  
     0.573
HCD_00670
COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases.
  
     0.556
HCD_03935
Site-specific DNA-methyltransferase; COG3392 Adenine-specific DNA methylase.
  
     0.554
HCD_06740
Alpha-(1, 3)-fucosyltransferase.
  
     0.505
HCD_01320
Hypothetical protein.
  
     0.500
Your Current Organism:
Helicobacter cetorum MIT995656
NCBI taxonomy Id: 1163745
Other names: H. cetorum MIT 99-5656, Helicobacter cetorum MIT 99-5656, Helicobacter cetorum str. MIT 99-5656, Helicobacter cetorum strain MIT 99-5656, Helicobacter sp. MIT 99-5656
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.