STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC45842.1Hypothetical protein. (96 aa)    
Predicted Functional Partners:
SFC16457.1
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
   
  
 0.673
SFC45783.1
Protein of unknown function.
       0.413
SFD48191.1
CsbD-like; Belongs to the UPF0337 (CsbD) family.
   
  
 0.410
SFD48284.1
Uncharacterized conserved protein YjbJ, UPF0337 family; Belongs to the UPF0337 (CsbD) family.
   
  
 0.410
Your Current Organism:
Massilia yuzhufengensis
NCBI taxonomy Id: 1164594
Other names: CGMCC 1.12041, KACC 16569, M. yuzhufengensis, Massilia sp. Y1243-1, Massilia yuzhufengensis Shen et al. 2013, strain Y1243-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.