STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH66820.1Single-stranded-DNA-specific exonuclease RecJ,cyanobacterial paralog. (280 aa)    
Predicted Functional Partners:
CCH66819.1
Single-stranded-DNA-specific exonuclease RecJ,cyanobacterial paralog.
     0.994
CCH67000.1
Single-stranded-DNA-specific exonuclease RecJ.
  
  
 
0.523
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
   
 0.518
CCH66821.1
Superfamily I DNA and RNA helicases.
 
    0.502
CCH67511.1
ATP-dependent DNA helicase RecQ.
   
 0.496
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
    
 
 0.492
CCH66330.1
Competence protein.
     
 0.489
CCH67264.1
Helicase PriA essential for oriC/DnaA-independent DNA replication.
  
     0.487
CCH67689.1
tRNA nucleotidyltransferase, A-adding; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
 
 
 0.437
pheT
Phenylalanyl-tRNA synthetase beta chain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
 
    0.435
Your Current Organism:
Richelia intracellularis
NCBI taxonomy Id: 1165094
Other names: R. intracellularis HH01, Richelia intracellularis HH01
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