STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDA65298.1EamA domain-containing membrane protein RarD. (301 aa)    
Predicted Functional Partners:
SDA65309.1
EamA domain-containing membrane protein RarD.
 
     0.650
SDA81130.1
tRNA-binding protein.
  
   0.576
SDA65319.1
Uncharacterized OsmC-related protein.
 
     0.456
SDA78667.1
Cellulase (glycosyl hydrolase family 5); Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.446
SDA97399.1
TPR repeat-containing protein.
  
     0.437
Your Current Organism:
Mesorhizobium qingshengii
NCBI taxonomy Id: 1165689
Other names: CCBAU 33460, CGMCC 1.12097, HAMBI 3277, LMG 26793, LMG:26793, M. qingshengii, Mesorhizobium qingshengii Zheng et al. 2013, Mesorhizobium sp. CCBAU 33430, Mesorhizobium sp. CCBAU 33431, Mesorhizobium sp. CCBAU 33446, Mesorhizobium sp. CCBAU 33455, Mesorhizobium sp. CCBAU 33460
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