STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oprF1Outer membrane porin F Root adhesin. (291 aa)    
Predicted Functional Partners:
FAES_0748
OmpA/MotB domain protein.
  
 
 0.774
FAES_1777
Lytic transglycosylase catalytic.
  
     0.517
FAES_3552
Lipoprotein-releasing system transmembrane protein lolC.
  
 
   0.505
mltD1
Membrane-bound lytic murein transglycosylase D.
 
 
 
 0.492
FAES_0010
MotA/TolQ/ExbB proton channel.
 
   
 0.491
FAES_0730
OmpA/MotB domain protein.
 
 
0.488
FAES_1316
Lytic transglycosylase catalytic.
  
     0.486
FAES_2464
Hypothetical protein.
       0.473
FAES_5442
OmpA/MotB domain protein.
 
  
0.449
FAES_2984
OmpA/MotB domain protein.
 
  
0.444
Your Current Organism:
Fibrella aestuarina
NCBI taxonomy Id: 1166018
Other names: F. aestuarina BUZ 2, Fibrella aestuarina BUZ 2, Fibrella aestuarina str. BUZ 2, Fibrella aestuarina strain BUZ 2, Flexibacteraceae bacterium BUZ 2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.