STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FAES_3039TonB-dependent receptor plug. (1050 aa)    
Predicted Functional Partners:
FAES_3040
RagB/SusD domain protein.
 
     0.935
FAES_4551
RagB/SusD domain protein.
 
 
   0.785
FAES_2691
Hypothetical protein.
  
 
   0.725
FAES_2401
RagB/SusD domain protein.
 
 
   0.693
FAES_3393
RagB/SusD domain protein.
  
 
   0.687
FAES_2792
RagB/SusD domain protein.
  
 
   0.686
FAES_3043
Hypothetical protein.
 
     0.676
FAES_5244
RagB/SusD domain protein.
 
 
   0.671
FAES_3041
Hypothetical protein.
       0.670
FAES_2162
RagB/SusD domain protein.
  
 
   0.642
Your Current Organism:
Fibrella aestuarina
NCBI taxonomy Id: 1166018
Other names: F. aestuarina BUZ 2, Fibrella aestuarina BUZ 2, Fibrella aestuarina str. BUZ 2, Fibrella aestuarina strain BUZ 2, Flexibacteraceae bacterium BUZ 2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.