STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FAES_4438AMP-dependent synthetase and ligase. (565 aa)    
Predicted Functional Partners:
FAES_5067
AMP-dependent synthetase and ligase.
 
 
0.926
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
    
  0.709
rplE
Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.
    
 
 0.709
rplR
Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.
    
 
 0.637
FAES_1608
3-hydroxyacyl-CoA dehydrogenase NAD-binding protein; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 
 0.612
FAES_2766
Phospholipid/glycerol acyltransferase.
   
 0.594
FAES_4042
Hypothetical protein.
    
  0.566
FAES_5450
Acyl-CoA dehydrogenase family member 11 ACAD-11.
 
  
 0.532
FAES_0579
3-hydroxyacyl-CoA dehydrogenase NAD-binding protein.
  
 
 0.528
FAES_4437
Hypothetical protein.
       0.526
Your Current Organism:
Fibrella aestuarina
NCBI taxonomy Id: 1166018
Other names: F. aestuarina BUZ 2, Fibrella aestuarina BUZ 2, Fibrella aestuarina str. BUZ 2, Fibrella aestuarina strain BUZ 2, Flexibacteraceae bacterium BUZ 2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.