STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FAES_5221RNA polymerase sigma factor sigK Sigma-K factor; Belongs to the sigma-70 factor family. ECF subfamily. (208 aa)    
Predicted Functional Partners:
algU
RNA polymerase sigma-H factor Sigma-30; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.771
FAES_1538
RNA polymerase, sigma-24 subunit, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.770
FAES_3538
RNA polymerase sigma factor sigW Sigma-W factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.767
sigX
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.762
FAES_4716
RNA polymerase, sigma-24 subunit, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.730
FAES_2898
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.721
rpoE
RNA polymerase sigma-E factor Sigma-24; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.719
FAES_3154
Hypothetical protein.
 
 
   0.658
FAES_2245
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.648
FAES_4194
RNA polymerase, sigma-24 subunit, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.575
Your Current Organism:
Fibrella aestuarina
NCBI taxonomy Id: 1166018
Other names: F. aestuarina BUZ 2, Fibrella aestuarina BUZ 2, Fibrella aestuarina str. BUZ 2, Fibrella aestuarina strain BUZ 2, Flexibacteraceae bacterium BUZ 2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.