STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEN81120.1Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain. (544 aa)    
Predicted Functional Partners:
SEN81059.1
Ribosome-associated heat shock protein Hsp15.
       0.772
SEN81091.1
ATP-dependent RNA helicase SUPV3L1/SUV3.
       0.772
SEN81024.1
Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
       0.695
SEN55284.1
Penicillin-binding protein 1A.
  
     0.654
SEN79729.1
Penicillin-binding protein 1A.
  
   
 0.612
SEM70334.1
Penicillin-binding protein 1A.
  
     0.599
SEN80996.1
Transcriptional regulator, CarD family.
 
     0.539
SEN16662.1
Flagellum-specific peptidoglycan hydrolase FlgJ.
  
 
 0.516
mrdB
Cell elongation-specific peptidoglycan biosynthesis regulator RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
 
   
 0.499
SEM90669.1
Signal peptidase I; Belongs to the peptidase S26 family.
 
  
 0.491
Your Current Organism:
Sphingomonas sp. S6262
NCBI taxonomy Id: 1166340
Other names: S. sp. S6-262, Sphingomonas sp. S6-262
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