STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UWK_00041Hypothetical protein; PFAM: 3D domain. (181 aa)    
Predicted Functional Partners:
mutL
DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.
       0.789
trmFO
tRNA:m(5)U-54 methyltransferase; Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs; Belongs to the MnmG family. TrmFO subfamily.
       0.766
UWK_01127
Uncharacterized protein involved in cysteine biosynthesis; PFAM: Etoposide-induced protein 2.4 (EI24).
  
     0.753
UWK_00951
Methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor; PFAM: PAS domain; Methyl-accepting chemotaxis protein (MCP) signalling domain; PAS fold; TIGRFAM: PAS domain S-box.
  
     0.688
UWK_00039
Hypothetical protein.
 
     0.615
UWK_00799
Type II secretory pathway, component HofQ; PFAM: AMIN domain; Secretin and TonB N terminus short domain; TPR repeat.
  
     0.601
UWK_01834
PFAM: Protein of unknown function (DUF1566).
  
     0.443
UWK_00038
TIGR00153 family protein; PFAM: Protein of unknown function DUF47; TIGRFAM: TIGR00153 family protein.
       0.422
UWK_01760
Phosphopantetheinyl transferase component of siderophore synthetase; PFAM: 4'-phosphopantetheinyl transferase superfamily; Belongs to the P-Pant transferase superfamily.
  
     0.419
Your Current Organism:
Desulfocapsa sulfexigens
NCBI taxonomy Id: 1167006
Other names: D. sulfexigens DSM 10523, Desulfocapsa sulfexigens DSM 10523, Desulfocapsa sulfexigens SB164P1, Desulfocapsa sulfexigens str. DSM 10523, Desulfocapsa sulfexigens strain DSM 10523
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