STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UWK_00297Hypothetical protein. (250 aa)    
Predicted Functional Partners:
UWK_01919
PAS domain S-box; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain; PAS domain; Protein of unknown function (DUF3365); TIGRFAM: PAS domain S-box.
   
 
 0.877
fusA
Translation elongation factor 2 (EF-2/EF-G); Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. [...]
 
     0.869
UWK_01118
Putative domain HDIG-containing protein; PFAM: HD domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain; PAS domain; TIGRFAM: PAS domain S-box; uncharacterized domain HDIG.
   
 
 0.725
UWK_02961
PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phospho-acceptor) domain; fused histidine kinase/response regulator receiver domain.
   
 
 0.714
UWK_00710
PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain; Domain of unknown function (DUF1083); TIGRFAM: proteobacterial dedicated sortase system histidine kinase.
    
 
 0.681
UWK_01247
Zn-dependent protease with chaperone function; PFAM: Peptidase family M48.
  
     0.681
UWK_03199
PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
    
 
 0.681
UWK_03443
PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
    
 
 0.681
UWK_00799
Type II secretory pathway, component HofQ; PFAM: AMIN domain; Secretin and TonB N terminus short domain; TPR repeat.
  
     0.678
UWK_03427
Hypothetical protein; PFAM: Domain of unknown function (DUF4390).
  
     0.651
Your Current Organism:
Desulfocapsa sulfexigens
NCBI taxonomy Id: 1167006
Other names: D. sulfexigens DSM 10523, Desulfocapsa sulfexigens DSM 10523, Desulfocapsa sulfexigens SB164P1, Desulfocapsa sulfexigens str. DSM 10523, Desulfocapsa sulfexigens strain DSM 10523
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